What do you mean by "small manual pad advance"? Extra bleed with the pads in? Or use a smaller width block?
After you have finished the bleed.
With wheel out, pads in, give the lever a gentle 2 or 3 pumps, watching the pads carefully, the goal is to advance them out a mm or so reducing the pad to discuss clearance. Refit wheel.
You may need to recentre the caliper and getting even clearance will be more finicky with less clearance to compensate for slightly warped/bent discs.
If you go too far it's best to spread the pistons back out. I like the sram spread tool rather than butchers screwdriver but both work.
With the pads advanced this way less fluid needs to be displaced before contact so you end up with less free travel.
You can achieve a similar thing by bleeding with old pads etc instead of bleed blocks but you end up overfilling with fluid and when things expand and get hot you risk having worse performance.
Because I'm very fussy with my brakes I tend to adjust them often to maintain the perfect lever.
I have XT/SLX, ZEE, RS, RSC and Codes and use the same method for all of them.
Some of the better pad contact adjustable levers make the fine tuning easier but I still give them a bit of "manual advance" to get that ultra short lever throw I like. Having good straight discs is important though or you will forever be chasing rubbing problems.