It's a good point. And whether the problems are the transponder technology, or other factors: things like in Adel mentioned above, people getting the transponders mixed up on different peoples bikes, having a fall & breaking it off, forgetting to put it on, going back over the finish mat as a DNF... it still understandably ends up as issues. Which is why we still have backups and spotters. Transponders are great with large numbers of riders, but any close race, I'd take photo finish over transponders any day, as do most elite races.
We had a photofinish at the Shep 4X which had the bikes 2/1000ths of a second apart (photo below). The XCC at Adel was 4/1000ths. When it's down to less than half a tyre being a picture directly across the finish line, they eliminate other source of error- such as transponder being in a slightly different position on the forks relative to the front of the front tyre (which is what officially counts), not triggering exactly when the front tyre is over the finish line, or even battery strength and frequency collisions can play a part at that resolution.
Something worth mentioning for riders when photofinish is being used (4X, XCO, XCC), there's no benefit in lifting front wheels for the sole purpose of breaking the "beam". We use the beam just to trigger the photofinish to save the image, not for timing. The beam can be a metre before or after the finish, we still get the image on the line- it's the line that counts. The image below is a good example- unless he lifted for a different reason, leaving it on the ground would have been safer.
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